Wiki Lint

Run a health check on the LLM Wiki vault — mechanical checks (orphans, broken links, stale pages, missing frontmatter, log gap, duplicates) plus semantic checks (contradictions, cross-reference gaps, concepts missing their own page). Outputs a markdown report with suggested actions. Usage /wiki-lint [--stale-days N] [--log-gap-days N]

Published by @Alireza Rezvani·0 agent reads / 30d·0 saves·

/wiki-lint

Health-check the wiki. Surfaces orphan pages, broken wikilinks, stale claims, missing frontmatter, contradictions, and structural drift. Reports, doesn't silently fix — you decide what to change.

Run this weekly, after batch ingests, and always before sharing the wiki.

Usage

/wiki-lint
/wiki-lint --stale-days 60
/wiki-lint --log-gap-days 7

What happens

Pass 1 — Mechanical (scripts)

  • skills/llm-wiki/scripts/lint_wiki.py — orphans, broken links, stale pages, missing frontmatter, duplicate titles, log gap
  • skills/llm-wiki/scripts/graph_analyzer.py — hubs, sinks, connected components, graph stats

Pass 2 — Semantic (LLM reads and thinks)

  • Contradictions between recently-updated pages
  • Stale claims superseded by newer sources
  • Concepts mentioned in plain text across 3+ pages without their own page
  • Cross-reference gaps (entities mentioned but not wikilinked)
  • Index drift (index.md out of sync with wiki/)

Pass 3 — Report

A markdown report grouped by severity:

# Wiki lint — <date>

**Total pages:** N  **Components:** N  **Last log:** <date>

## Found
- ⚠️ <N> contradictions (list)
- <N> orphans
- <N> broken links
- <N> stale pages
- ...

## Suggested actions
1. Investigate contradiction between [[sources/a]] and [[sources/b]]
2. Create concept page for "<name>"
3. Fix broken link in [[concepts/x]]
4. Re-ingest [[sources/c]] — stale + contradicted
5. ...

Then appends a lint entry to log.md.

Sub-agent

Dispatches the wiki-linter sub-agent. See agents/wiki-linter.md.

Scripts

  • engineering/llm-wiki/skills/llm-wiki/scripts/lint_wiki.py
  • engineering/llm-wiki/skills/llm-wiki/scripts/graph_analyzer.py
  • engineering/llm-wiki/skills/llm-wiki/scripts/append_log.py

Frequency

TriggerPass
WeeklyMechanical only — fast
After batch ingestFull (mechanical + semantic)
MonthlyFull + structural review
Before sharingFull + extra review

Skill Reference

engineering/llm-wiki/skills/llm-wiki/SKILL.mdengineering/llm-wiki/skills/llm-wiki/references/lint-workflow.md

Bundled with this artifact

2 files

Reference files that ship alongside this artifact. Agents pull these in only when the task needs them.

More on the bench

SKILL0

Postgres

Execute read-only SQL queries against multiple PostgreSQL databases. Use when: (1) querying PostgreSQL databases, (2) exploring database schemas/tables, (3) running SELECT queries for data analysis, (4) checking database contents. Supports multiple database connections with descriptions for intelligent auto-selection. Blocks all write operations (INSERT, UPDATE, DELETE, DROP, etc.) for safety.

software-engineering+2
0
SKILL0

Pylabrobot

Vendor-agnostic lab automation framework. Use when controlling multiple equipment types (Hamilton, Tecan, Opentrons, plate readers, pumps) or needing unified programming across different vendors. Best for complex workflows, multi-vendor setups, simulation. For Opentrons-only protocols with official API, opentrons-integration may be simpler.

software-engineering+2
0
SKILL0

Nextflow

Build, run, and debug Nextflow data pipelines and nf-core workflows end to end. Use whenever the user mentions Nextflow, nf-core, .nf files, nextflow.config, DSL2, processes/channels/operators, samplesheets, or wants to run a community pipeline (e.g. nf-core/rnaseq, nf-core/sarek), write or test a module/subworkflow with nf-test, configure executors/containers (Docker, Singularity/Apptainer, Conda, Wave), scale a workflow to HPC/SLURM or cloud (AWS Batch, Google Batch, Azure, Kubernetes), or debug a failed/-resume run. Make sure to use this skill for any reproducible scientific/bioinformatics workflow work even if the user does not say the word "Nextflow", and for authoring nf-core-compliant pipelines, modules, configs, and linting.

software-engineering+2
0